Parameters
Note
Siren allows to tune various parameters via an interface menu .
Non-default parameters can be stored in a preferences file, e.g. via .
Parameters are listed below by their label and identifier, as used respectively in the interface and in preference files, with a short explanation of the parameter, type, default value and indication of file where the parameter is defined.
The parameters that can be set through the preference interface can be mainly divided into two categories, mining parameters, that pertain to the mining algorithm, and visualization parameters, that pertain to the interactive visualizations, each split over several tabs.
Mining parameters
Mining parameters are specified here and can be set through the interface.
Quite many parameters are available for tuning, but in general only a few of them need to be adjusted.
In particular, the parameters setting threshold values on the support of the queries, on the accuracy of the returned redescriptions, as well as on the type of queries, are the most important ones.
Mining: Method
-
Mining algorithm
-
mining_algo
- Algorithm to use for mining, greedy ReReMi or based on classification trees (restrictions apply).
- single option in {reremi, layeredtrees, splittrees, cartwheel, fim}
- default: reremi
- miner_confdef.xml
Mining: Queries
-
LHS max number of variables
-
max_var_s0
- Maximum number of variables in a left-hand side query, maximum tree depth in tree-based algorithms.
- open text
- default: 4
- miner_confdef.xml
-
RHS max number of variables
-
max_var_s1
- Maximum number of variables in a right-hand side query, maximum tree depth in tree-based algorithms.
- open text
- default: 4
- miner_confdef.xml
Mining: Candidate filtering
-
Min contribution
-
min_itm_c
- Minimum contribution, number of supporting entities impacted by the addition of a literal in ReReMi or minimum node size in tree-based algorithms. Values between 0 and 1 are interpreted as ratio of the total number of entities.
- open text
- default: 3.0
- miner_confdef.xml
-
Min support
-
min_itm_in
- Minimum number of supporting entities. Values between 0 and 1 are interpreted as ratio of the total number of entities.
- open text
- default: 0.05
- miner_confdef.xml
-
Min uncovered
-
min_itm_out
- Minimum number of uncovered entities. Values between 0 and 1 are interpreted as ratio of the total number of entities.
- open text
- default: 0.05
- miner_confdef.xml
-
Min improvement
-
min_impr
- Minimum improvement score for an acceptable extension.
- open text
- default: 0.0
- miner_confdef.xml
-
Max initial candidates
-
max_inits
- Maximum number of initial candidates explored, pairs for ReReMi, initial targets for trees. -1 leads to expand all.
- open text
- default: 100
- miner_confdef.xml
-
Initial candidates productivity
-
inits_productivity
- Productivity when creating an initial pair of literals from non-Boolean variables.
- single option in {low, medium, high}
- default: medium
- miner_confdef.xml
-
Excluded initial cand. pair types
-
inits_types_exclude
- Excluded variable types in initial pairs. B, C and N stand for Boolean, Categorical and Numerical variables, respectively. Note order is simpler type first, not by sides.
- multiple options in {BB, BC, BN, CC, CN, NN}
- default: {}
- miner_confdef.xml
Mining: Final filtering
-
Min support
-
min_fin_in
- Minimum number of supporting entities, applied for final filtering. Values between 0 and 1 are interpreted as ratio of the total number of entities.
- open text
- default: -1.0
- miner_confdef.xml
-
Min uncovered
-
min_fin_out
- Minimum number of uncovered entities, applied for final filtering. Values between 0 and 1 are interpreted as ratio of the total number of entities.
- open text
- default: -1.0
- miner_confdef.xml
-
Min accuracy
-
min_fin_acc
- Minimum accuracy, applied for final filtering.
- open text
- default: 0.01
- miner_confdef.xml
-
Max p-value
-
max_fin_pval
- Maximum p-value, applied for final filtering.
- open text
- default: 0.01
- miner_confdef.xml
Mining: Additional filtering
-
Max Area Overlap
-
max_overlap_area
- Two redescriptions whose area overlap is beyond this ratio are considered redundant.
- open text
- default: 0.5
- miner_confdef.xml
-
Max Rows Overlap
-
max_overlap_rows
- Two redescriptions whose row overlap is beyond this ratio are considered redundant.
- open text
- default: 0.5
- miner_confdef.xml
Mining adv.: Process
-
Nb processes
-
nb_processes
- Maximum number of mining processes to use in parallel.
- open text
- default: 1
- miner_confdef.xml
-
Log verbosity
-
verbosity
- Verbosity of the mining process output.
- range in [0, 10]
- default: 4
- miner_confdef.xml
-
Debug checks
-
debug_checks
- For debugging, double check counts.
- yes/no
- default: no
- miner_confdef.xml
Mining adv.: Other common parameters
-
Batch output
-
batch_out
- Maximum number of redescriptions returned from an expansion batch.
- open text
- default: 1
- miner_confdef.xml
-
Min total number of variables
-
min_fin_var
- Maximum number of variables per redescription, applied for final filtering.
- open text
- default: 2
- miner_confdef.xml
-
Weight Inside
-
in_weight
- Weight for entities inside selected area (only applies when such an area is specified).
- open text
- default: 10
- miner_confdef.xml
-
Weight Outside
-
out_weight
- Weight for entities outside selected area (only applies when such an area is specified).
- open text
- default: 1
- miner_confdef.xml
-
Var group compatibility
-
var_compat
- Fixes whether group ids should differ or match for variables to be considered compatible (gid=-1 is universally compatible).
- single option in {differ, match}
- default: differ
- miner_confdef.xml
-
p-value formula
-
method_pval
- Formula used for computing the p-value.
- single option in {marg, supp, over}
- default: marg
- miner_confdef.xml
-
Missing values belief
-
parts_type
- Type of Jaccard index, determines how to consider missing values when computing support statistics.
- single option in {rejective, optimistic, pessimistic, positive, negative, basic, exclu}
- default: rejective
- miner_confdef.xml
Mining adv.: Tree-based algorithms
-
Max rounds in CartWheel
-
max_rounds
- Maximum number of alternations in CartWheel algorithm.
- open text
- default: 10
- miner_confdef.xml
-
Split criterion
-
split_criterion
- Score used to evaluate splits during decision tree induction.
- single option in {gini, entropy}
- default: gini
- miner_confdef.xml
Mining adv.: Splittrees variant
-
Init depth
-
splittrees_init_depth
- Maximum tree depth for the split in the first round.
- open text
- default: 1
- miner_confdef.xml
-
Update target
-
splittrees_update_target
- Update the target between tree growing rounds.
- yes/no
- default: no
- miner_confdef.xml
-
Both sides change
-
splittrees_both_sides_change
- Require both sides to be different in successive tree growing rounds.
- yes/no
- default: no
- miner_confdef.xml
-
Dynamic side
-
splittrees_dyn_side
- Choose the side on which to grow the tree first depending on the source of the target (else always start with RHS).
- yes/no
- default: yes
- miner_confdef.xml
ReReMi: Queries
-
Single side OR
-
single_side_or
- Restrict use of disjunction to only one side.
- yes/no
- default: yes
- miner_confdef.xml
-
Multi categories
-
multi_cats
- Allow combining multiple categories of a categorical variable.
- yes/no
- default: no
- miner_confdef.xml
-
Conditional
-
add_condition
- Allow making conditional redescriptions, if suitable data is provided.
- yes/no
- default: no
- miner_confdef.xml
-
LHS Literals Bool
-
neg_query_s0_1
- Types of literals allowed in the left-hand side queries for Boolean literals.
- multiple options in {positive, negative}
- default: {positive}
- miner_confdef.xml
-
LHS Literals Cat
-
neg_query_s0_2
- Types of literals allowed in the left-hand side queries for categorical literals.
- multiple options in {positive, negative}
- default: {positive}
- miner_confdef.xml
-
LHS Literals Num
-
neg_query_s0_3
- Types of literals allowed in the left-hand side queries for numerical literals.
- multiple options in {positive, negative}
- default: {positive}
- miner_confdef.xml
-
LHS Operators
-
ops_query_s0
- Type of operators allowed in the left-hand side queries.
- multiple options in {conjunction, disjunction}
- default: {conjunction, disjunction}
- miner_confdef.xml
-
RHS Literals Bool
-
neg_query_s1_1
- Types of literals allowed in the right-hand side queries for Boolean literals.
- multiple options in {positive, negative}
- default: {positive}
- miner_confdef.xml
-
RHS Literals Cat
-
neg_query_s1_2
- Types of literals allowed in the right-hand side queries for categorical literals.
- multiple options in {positive, negative}
- default: {positive}
- miner_confdef.xml
-
RHS Literals Num
-
neg_query_s1_3
- Types of literals allowed in the right-hand side queries for numerical literals.
- multiple options in {positive, negative}
- default: {positive}
- miner_confdef.xml
-
RHS Operators
-
ops_query_s1
- Type of operators allowed in the right-hand side queries.
- multiple options in {conjunction, disjunction}
- default: {conjunction, disjunction}
- miner_confdef.xml
ReReMi: Initial pairs
-
Init min score
-
init_minscore
- Minimum score for an initial candidate to be considered.
- open text
- default: 0.01
- miner_confdef.xml
-
Pairs-expand balance
-
pe_balance
- Balance between generating initial pairs and expanding them (0 means generating all pairs first).
- range in [0, 10]
- default: 4
- miner_confdef.xml
-
Expansion order
-
pair_sel
- Order in which the initial pairs are processed, either overall next best score or alternating between side considering next best variables in turn.
- single option in {overall, alternate}
- default: alternate
- miner_confdef.xml
ReReMi exp.: Candidate expansion
-
Accuracy improvement coefficient
-
score.impacc
- Coefficient of the accuracy improvement for scoring extension candidates.
- open text
- default: 1.0
- miner_confdef.xml
-
Relative Accurracy improvement coefficient
-
score.rel_impacc
- Coefficient of the relative accuracy improvement for scoring extension candidates.
- open text
- default: 0.0
- miner_confdef.xml
-
Redescription p-value coefficient
-
score.pval_red
- Coefficient of the redescription p-value for scoring extension candidates. Negative values are interpreted as a threshold weighted by p-value factor.
- open text
- default: 0.01
- miner_confdef.xml
-
Query p-value coefficient
-
score.pval_query
- Coefficient of the query p-value for scoring extension candidates. Negative values are interpreted as a threshold weighted by p-value factor.
- open text
- default: 0.01
- miner_confdef.xml
-
p-value factor
-
score.pval_fact
- Weight for p-value in case of using thresholds for scoring extension candidates.
- open text
- default: 1.0
- miner_confdef.xml
-
Batch capacity
-
batch_cap
- Maximum number of candidates expanded at each step of the search.
- open text
- default: 4
- miner_confdef.xml
-
Amnesic
-
amnesic
- Not amnesic means the algorithm remembers previously generated redescriptions and avoid generating them again.
- yes/no
- default: no
- miner_confdef.xml
ReReMi exp.: Numerical attributes discretization
-
Max number segments
-
max_seg
- Maximum number of segments, i.e. distinct values for a numerical variable.
- open text
- default: 20
- miner_confdef.xml
-
Lower tail aggregate
-
lower_tail_agg
- Threshold for the lower tail, when aggregating keeping only extreme values.
- open text
- default: 0.0
- miner_confdef.xml
-
Upper tail aggregate
-
upper_tail_agg
- Threshold for the upper tail, when aggregating keeping only extreme values.
- open text
- default: 0.0
- miner_confdef.xml
-
Max aggregation
-
max_agg
- Maximum number of buckets aggregated together.
- open text
- default: 15
- miner_confdef.xml
-
Max product buckets
-
max_prodbuckets
- Maximum product of the number of buckets on either side.
- open text
- default: 5000
- miner_confdef.xml
Visualization parameters
Visualization parameters are specified here and can be set through the interface.
For instance, they allows to modify the appearance of the maps, choose the colors of the different support subsets, etc.
Views: Vizualizations
-
Intab grid rows
-
intab_nbr
- Number of rows of the grid for visualizations in the tab.
- open text
- default: 1
- views_confdef.xml
-
Intab grid cols
-
intab_nbc
- Number of columns of the grid for visualizations in the tab.
- open text
- default: 2
- views_confdef.xml
-
Dot size
-
dot_size
- Size of the dots in points.
- range in [0.0, 10.0]
- default: 3.0
- views_confdef.xml
-
Font size
-
plot_fontsize
- Font size used in plots for ticks, etc.
- range in [0, 100]
- default: 12
- views_confdef.xml
-
Details level
-
details_level
- Level of details for plotting the parallel coordinates.
- range in [0, 100]
- default: 50
- views_confdef.xml
-
Max emph lbls
-
max_emphlbl
- More that this number of entities selected at once will not get individual labels.
- range in [-1, 20]
- default: 5
- views_confdef.xml
-
Dot shape
-
dot_shape
- Shape of the dots
- single option in {s, o, p, h, 8, ., ,, *, +, x}
- default: s
- views_confdef.xml
-
Transparency off
-
alpha_off
- Turn transparency off.
- yes/no
- default: no
- views_confdef.xml
-
Add stamp
-
add_stamp
- Stamp redescription above the figure.
- yes/no
- default: no
- views_confdef.xml
-
Detailed missing
-
miss_details
- Show details of different missing values.
- yes/no
- default: yes
- views_confdef.xml
-
Draw uncovered
-
draw_delta
- Draw uncovered entities (map)
- yes/no
- default: yes
- views_confdef.xml
-
Click entities
-
click_entities
- Show details entities labels on click.
- yes/no
- default: yes
- views_confdef.xml
-
Hover entities
-
hover_entities
- Show details entities labels on hover.
- yes/no
- default: no
- views_confdef.xml
-
Hover coordinates
-
hover_coords
- Show coordinates on hover.
- yes/no
- default: no
- views_confdef.xml
-
Show literals contribution
-
literals_contrib
- Show contribution of literals (PaCo)
- yes/no
- default: no
- views_confdef.xml
Colors: Colors
-
Custom cluster colors
-
custom_ccmap
- Custom colors for plotting clusters (matplotlib cmap name, list or dictionnary of hexadecimal colors).
- open text
- default:
- views_confdef.xml
-
Color LHS
-
color_l
- Color for plotting the LHS support.
- color #RRGGBB
- default: #fc5864
- views_confdef.xml
-
Color RHS
-
color_r
- Color for plotting the RHS support.
- color #RRGGBB
- default: #74a8f6
- views_confdef.xml
-
Color Intersection
-
color_i
- Color for plotting the intersection support.
- color #RRGGBB
- default: #662a8d
- views_confdef.xml
-
Color Uncovered
-
color_o
- Color for plotting the uncovered entities.
- color #RRGGBB
- default: #e6e6e6
- views_confdef.xml
-
Color Highlight
-
color_h
- Color for highlighting entities.
- color #RRGGBB
- default: #ffff00
- views_confdef.xml
List views: Vizualizations
-
Max nb. clusters
-
max_clus
- Maximum number of clusters in similarity list view.
- open text
- default: 20
- views_confdef.xml
-
Values for blocks
-
blocks_disp_values
- Property to use as value for blocks.
- single option in {fractions, percentages, counts}
- default: fractions
- views_confdef.xml
-
Re-order r.ids for blocks
-
blocks_reorder_rids
- Reorder redescriptions for blocks.
- yes/no
- default: yes
- views_confdef.xml
-
Show r.ids for blocks
-
blocks_show_rids
- Show redescriptions ids for blocks.
- yes/no
- default: yes
- views_confdef.xml
-
Show values for blocks
-
blocks_show_values
- Show values for blocks.
- yes/no
- default: no
- views_confdef.xml
-
Draw selection block
-
blocks_show_emph
- Draw special block for selection.
- yes/no
- default: yes
- views_confdef.xml
-
Support parts
-
supp_part_clus
- Support parts to use in computing clusters.
- multiple options in {Exx, Exo, Eox, Eoo}
- default: {Exx}
- views_confdef.xml
-
Missing support parts
-
miss_part_clus
- Missing support parts to use in computing clusters.
- multiple options in {Exm, Emx, Eom, Emo, Emm}
- default: {}
- views_confdef.xml
Maps elems.: Elements
-
Map background opacity
-
map_back_alpha
- Opacity of the background image.
- range in [0, 100]
- default: 100
- views_confdef.xml
-
Map background scale
-
map_back_scale
- Scale of the background image.
- range in [0, 100]
- default: 100
- views_confdef.xml
-
Map background
-
map_back
- Background to use for the map (only with Basemap, not with Cartopy).
- single option in {none, shaded relief, etopo relief, NASA Blue Marble}
- default: none
- views_confdef.xml
-
Overlay
-
map_lines_overlay
- Overlay map lines on top of other plot elements.
- yes/no
- default: no
- views_confdef.xml
-
Polygons
-
map_poly
- Use polygons to represent entities on the map
- yes/no
- default: yes
- views_confdef.xml
-
Map natural areas
-
map_elem_area
- Map natural areas to paint.
- multiple options in {seas, continents, lakes}
- default: {seas}
- views_confdef.xml
-
Map natural elements
-
map_elem_natural
- Map natural elements to draw.
- multiple options in {coasts, rivers}
- default: {coasts}
- views_confdef.xml
-
Map geopolitic elements
-
map_elem_geop
- Map geopolitic borders to paint.
- multiple options in {countries, states}
- default: {countries}
- views_confdef.xml
-
Map imaginary circles
-
map_elem_circ
- Map imaginary circles to draw.
- multiple options in {parallels, meridians}
- default: {}
- views_confdef.xml
-
Line color
-
line_color
- Color for drawing map lines.
- color #RRGGBB
- default: #808080
- views_confdef.xml
-
Sea color
-
sea_color
- Color for filling water bodies in maps.
- color #RRGGBB
- default: #f9fcff
- views_confdef.xml
-
Land color
-
land_color
- Color for filling land areas in maps.
- color #RRGGBB
- default: #ffffff
- views_confdef.xml
Maps proj.: Projection
-
Left corner longitude
-
llon
- Map boundary’s left corner longitude.
- range in [-180.0, 181.0]
- default: 181.0
- views_confdef.xml
-
Right corner longitude
-
ulon
- Map boundary’s right corner longitude.
- range in [-180.0, 181.0]
- default: 181.0
- views_confdef.xml
-
Lower corner latitude
-
llat
- Map boundary’s lower corner latitude.
- range in [-180.0, 181.0]
- default: 181.0
- views_confdef.xml
-
Upper corner latitude
-
ulat
- Map boundary’s upper corner latitude.
- range in [-180.0, 181.0]
- default: 181.0
- views_confdef.xml
-
Resolution
-
map_resolution
- Resolution of the map elements.
- single option in {crude, low, intermediate, high, full}
- default: crude
- views_confdef.xml
-
Projection
-
map_proj
- Projection to use for the map.
- single option in {none, Plate Carree, Transverse Mercator, Mercator, Lambert Cylindrical, Lambert Conformal, Lambert Azimuthal Equal Area, Miller, Rotated Pole, Gnomonic, Stereographic, North Polar Stereo, South Polar Stereo, Orthographic, Mollweide, Robinson, Interrupted Goode Homolosine, Geostationary, Albers Equal Area, Azimuthal Equidistant, Sinusoidal}
- default: Miller
- views_confdef.xml
Other parameters
It is possible to adjust the parameters through the interface then export them to a file.
In particular, a template can be generated and exported which can be used to run the ReReMi mining algorithm from the command line, after filling in input/output parameters, which are specified here.
Further parameters pertain to randomization, cross-fold tests, server parameters, etc.
File Names: Data Input
-
LHS data filename
-
LHS_data
- Complete filename for the left hand side data.
- open text
- default:
- inout_confdef.xml
-
RHS data filename
-
RHS_data
- Complete filename for the right hand side data.
- open text
- default:
- inout_confdef.xml
-
Data repertory
-
data_rep
- Repertory where the data files are stored.
- open text
- default: __TMP_DIR__
- inout_confdef.xml
-
LHS data basename
-
data_l
- Basename of the file containing the left hand side data.
- open text
- default: left
- inout_confdef.xml
-
RHS data basename
-
data_r
- Basename of the file containing the right hand side data.
- open text
- default: right
- inout_confdef.xml
-
LHS data extension
-
ext_l
- Extension of the file containing the left hand side data.
- open text
- default: .csv
- inout_confdef.xml
-
RHS data extension
-
ext_r
- Extension of the file containing the right hand side data.
- open text
- default: .csv
- inout_confdef.xml
-
NA representation
-
NA_str
- String representation for missing values (CSV format).
- open text
- default: nan
- inout_confdef.xml
-
Delimiter
-
delim_in
- Field delimiter (CSV format).
- single option in {(auto), TAB, ;, ,, SPC}
- default: (auto)
- inout_confdef.xml
-
Time year first
-
time_yearfirst
- Whether to interpret the first value in an ambiguous 3-integer date as the year (dateutils).
- single option in {(auto), yes, no}
- default: (auto)
- inout_confdef.xml
-
Time day first
-
time_dayfirst
- Whether to interpret the first value in an ambiguous 3-integer date as the day (dateutils).
- single option in {(auto), yes, no}
- default: (auto)
- inout_confdef.xml
File Names: Results Output
-
Results repertory
-
result_rep
- Repertory where to save the results.
- open text
- default: __TMP_DIR__
- inout_confdef.xml
-
Results data filename
-
out_base
- Name of the file where to store the results.
- open text
- default: results
- inout_confdef.xml
-
Queries extension
-
ext_queries
- Extension of the file where to save the queries.
- open text
- default: .queries
- inout_confdef.xml
-
Supports extension
-
ext_support
- Extension of the file where to save the supports.
- open text
- default: .supports
- inout_confdef.xml
-
Log data extension
-
ext_log
- Extension of the file where to save log traces.
- open text
- default: .txt
- inout_confdef.xml
-
Queries filename
-
queries_file
- Complete filename for the queries.
- open text
- default:
- inout_confdef.xml
-
Named queries filename
-
queries_named_file
- Complete filename for the queries with variable names.
- open text
- default:
- inout_confdef.xml
-
Support filename
-
support_file
- Complete filename for the support.
- open text
- default:
- inout_confdef.xml
Advanced: File Names
-
Series ID
-
series_id
- Series ID to replace __SID__ in filenames.
- open text
- default:
- inout_confdef.xml
-
Logfile
-
logfile
- File to log. + means generate filename from queries output file. - means stdout.
- open text
- default: -
- inout_confdef.xml
-
Pairs store filename
-
pairs_store
- Name of the file where to store initial pairs.
- open text
- default:
- inout_confdef.xml
-
Alternate queries
-
queries_alternate
- Alternate filename or suffix for the queries, for post-processing.
- open text
- default:
- inout_confdef.xml
Advanced: Extra
-
Mask for LHS variables
-
mask_vars_LHS
- Mask for enabling or disabling LHS variables, overriding any info in the data file.
- open text
- default:
- inout_confdef.xml
-
Mask for RHS variables
-
mask_vars_RHS
- Mask for enabling or disabling RHS variables, overriding any info in the data file.
- open text
- default:
- inout_confdef.xml
-
Mask for rows
-
mask_rows
- Mask for enabling or disabling rows, overriding any info in the data file.
- open text
- default:
- inout_confdef.xml
-
Extensions repertory
-
extensions_rep
- Repertory where extension data files are stored.
- open text
- default: __TMP_DIR__
- inout_confdef.xml
-
Extensions data filenames
-
extensions_names
- Keys and names of the extension data files.
- open text
- default:
- inout_confdef.xml
-
Files defining reds fields
-
fields_rdefs
- Files defining extra redescriptions fields.
- open text
- default:
- inout_confdef.xml
-
Files defining vars fields
-
fields_vdefs
- Files defining extra variables fields.
- open text
- default:
- inout_confdef.xml
-
Files defining reds actions
-
actions_rdefs
- Files defining extra redescriptions actions.
- open text
- default:
- inout_confdef.xml
-
Activated extensions
-
activated_extensions
- Data extensions to activate.
- multiple options in {(auto), geoplus}
- default: {}
- inout_confdef.xml
Network: Work client
-
Results delay
-
results_delay
- Delay between results checks by the client, in seconds.
- open text
- default: 5
- network_confdef.xml
Network: Work server
-
Workserver IP
-
workserver_ip
- IP adress of the server executing the computational tasks or local for local computations.
- open text
- default: local
- network_confdef.xml
-
Workserver Port
-
workserver_port
- Listening port of the server executing the computational tasks.
- open text
- default: 55444
- network_confdef.xml
-
Workserver Key
-
workserver_authkey
- Authentification key on the server executing the computational tasks.
- open text
- default: sesame
- network_confdef.xml
-
Client Id
-
workserver_clientid
- Client ID to reconnect on the server.
- open text
- default: 0
- network_confdef.xml
Extensions: geoplus
-
H grid percentile
-
hgrid_percentile
- Percentile to determine grid height.
- range in [0.0, 100.0]
- default: 90.0
- dataext_confdef.xml
-
W grid percentile
-
wgrid_percentile
- Factor to multiply grid width.
- range in [0.0, 100.0]
- default: 90.0
- dataext_confdef.xml
-
Distance type
-
dst_type
- Distance to use when computing the grid
- single option in {globe, flat}
- default: globe
- dataext_confdef.xml
-
Draw tighter borders
-
after_cut
- Draw tighter border between distant sites.
- yes/no
- default: yes
- dataext_confdef.xml
Folds: Automatic splits
-
Strips direction
-
coo_dim
- Coordinate to cut the strips along (-1 and -2 for cut along longitudes and latitudes, respectively).
- open text
- default: -1
- folds_confdef.xml
-
Granularity
-
grain
- Granularity of the cut (lower means narrower strips).
- open text
- default: 1.0
- folds_confdef.xml
-
Variable
-
folds_col
- Name of the variable to use for splitting the data into subsets.
- open text
- default:
- folds_confdef.xml
-
Nb folds
-
nb_folds
- Number of parts the data should be split into.
- range in [2, 20]
- default: 5
- folds_confdef.xml
Randomization: Data Input
-
Traits data filename
-
traits_data
- Complete filename for the traits data.
- open text
- default:
- rnd_confdef.xml
-
Traits data basename
-
data_t
- Basename of the file containing the traits data.
- open text
- default:
- rnd_confdef.xml
-
Traits data extension
-
ext_t
- Extension of the file containing the traits data.
- open text
- default: .csv
- rnd_confdef.xml
-
Name count variable
-
count_vname
- Name for the variable that stores occurrence counts.
- open text
- default: COUNTS
- rnd_confdef.xml
-
Selection redescription
-
select_red
- Redescription used to select data rows.
- open text
- default:
- rnd_confdef.xml
-
Agg. precision
-
agg_prec
- Precision of aggregated data.
- open text
- default: -1
- rnd_confdef.xml
Randomization: Series
-
Randomization serie size
-
rnd_series_size
- Number of runs per randomization series.
- open text
- default: 10
- rnd_confdef.xml
-
Randomization seed
-
rnd_seed
- Seed for the random number generator.
- open text
- default: -1
- rnd_confdef.xml
-
Randomization meth.
-
rnd_meth
- Randomization method used to generate data.
- multiple options in {none, permute_RHS, permute_LHS, permute_traits, shuffle_traits, swaprnd_occs}
- default: {none}
- rnd_confdef.xml